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“Pulling a Larry Martin” with basal bird pectorals and hands

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This is a cautionary tale
The following blog reminds all workers to score the entire specimen if possible, and to score as many more-or-less-complete specimens as possible. Why?

It is of vital importance to use as much data as possible
when scoring each taxon in a phylogenetic analysis to remove any trace of attraction by convergence that happens when just using bits and pieces of cherry-picked taxa.

From Pittman et al. 2020,
“Generally during early avian evolution, the furcula, coracoid, and sternum become more craniocaudally elongate, while the manual digits become reduced and fusion between the metacarpals increases.” 

Not true. In a valid phylogenetic context (Figs. 1–3), like the wide gamut large reptile tree (LRT, 1729+ taxa; subsets Figs. 2, 3), some taxa developed birdy traits quickly while others dawdled or reversed. In this way some bones demonstrated convergence with other less related clades. With this in mind, start with a valid unbiased topology, then let the taxa tell their own story. Avoid the temptation of an easy diagram. Do the necessary work.

Figure 1. Avian furcula aviation from Pittman et al. 2020 and repaired based on LRT results. Let your software decide based on the whole specimen. Convergence is rampant as you can see here. ” data-medium-file=”https://pterosaurheresies.files.wordpress.com/2020/08/avian_furcula588.gif?w=207″ data-large-file=”https://pterosaurheresies.files.wordpress.com/2020/08/avian_furcula588.gif?w=584″ class=”size-full wp-image-48122″ src=”https://pterosaurheresies.files.wordpress.com/2020/08/avian_furcula588.gif?w=584&h=847″ alt=”Figure 1. Avian furcula aviation from Pittman et al. 2020 and repaired based on LRT results. Let your software decide based on the whole specimen. Convergence is rampant as you can see here. ” width=”584″ height=”847″ />

Figure 1. Avian furcula aviation from Pittman et al. 2020 and repaired based on LRT results. Let your software decide based on the whole specimen. Convergence is rampant as you can see here.

Due to taxon exclusion
Pittman et al. mixed up the order of the pectoral girdles + hands of basal birds (Fig. 1), hoping to tell the story they wanted to tell: gradual evolution. Not only did they skip about a dozen pertinent taxa, they got the order wrong by eyeballing a few traits on cherry-picked taxa.

With more taxa, as in the LRT,
(Figs. 2, 3) the girdles and limbs are phylogenetically re-ordered here (Fig. 1, layer 2 with colors). If Pittman et al. wanted to show gradual evolution, they needed to first establish a valid tree topology by adding more taxa. Instead, by cherry-picking certain traits to show gradual evolution, Pittman et al. were “Pulling a Larry Martin“, putting individual traits on cherry-picked taxa ahead of an entire suite of traits and a wide gamut of taxa.

Figure 2. Subset of the LRT focusing on Pennaraptora 2014 = Tyrannoraptora 1999. Here Khaan and Velociraptor substitute for Oviraptor and Deinonychus. ” data-medium-file=”https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=144″ data-large-file=”https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=492″ class=”size-full wp-image-48063″ src=”https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=584&h=1216″ alt=”Figure 2. Subset of the LRT focusing on Pennaraptora 2014 = Tyrannoraptora 1999. Here Khaan and Velociraptor substitute for Oviraptor and Deinonychus.” width=”584″ height=”1216″ srcset=”https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=584&h=1216 584w, https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=72&h=150 72w, https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg?w=144&h=300 144w, https://pterosaurheresies.files.wordpress.com/2020/08/theropods2020birds0588-1.jpg 588w” sizes=”(max-width: 584px) 100vw, 584px” />

Figure 2. Subset of the LRT focusing on Pennaraptora 2014 = Tyrannoraptora 1999 = Coelurosauria 1914. Here Khaan and Velociraptor substitute for Oviraptor and Deinonychus.

Figure 2. Subset of the LRT focusing on bird origins. Crown birds and toothed birds are highlighted. ” data-medium-file=”https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=104″ data-large-file=”https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=356″ class=”size-full wp-image-43712″ src=”https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=584&h=1679″ alt=”Figure 2. Subset of the LRT focusing on bird origins. Crown birds and toothed birds are highlighted.” width=”584″ height=”1679″ srcset=”https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=584&h=1679 584w, https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=52&h=150 52w, https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg?w=104&h=300 104w, https://pterosaurheresies.files.wordpress.com/2020/03/origin_of_birds_cladogram2020.jpg 588w” sizes=”(max-width: 584px) 100vw, 584px” />

Figure 3. Subset of the LRT focusing on bird origins. Crown birds and toothed birds are highlighted. Figure 2 is slightly more up-to-date, but includes fewer extant birds.

When the phylogenetic order is corrected
based on unbiased results recovered by the LRT (subsets Figs. 2, 3), what seemed to Pittman et al. a gradual transitional series is here revealed to be an example or two of convergence. Note the similarly elongate coracoids on the enantiornithine Parabohaiornis and the unrelated ornithurine, Yanornis (Fig. 1`), derived from an Early Cretaceous sister to a living taxon, Megapodius.

Time after time paleontologists cherry-pick taxa.
That has to stop. Add more taxa and let the software decide the tree topology. Similarly, don’t rely on parts alone (Fig. 1) to illustrate hypotheses, unless they represent taxa already nesting together based on all of their parts and a wide gamut of taxa. Body parts, like hands and girdles, can converge, as they do here.

Figure 3. Mammal tooth evolution alongside odontocete tooth evolution, reversing the earlier addition of cusps. ” data-medium-file=”https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=300″ data-large-file=”https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=584″ class=”size-full wp-image-34913″ src=”https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=584&h=406″ alt=”Figure 3. Mammal tooth evolution alongside odontocete tooth evolution, reversing the earlier addition of cusps.” width=”584″ height=”406″ srcset=”https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=584&h=406 584w, https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=150&h=104 150w, https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg?w=300&h=209 300w, https://pterosaurheresies.files.wordpress.com/2018/12/Mammal_tooth_evolution588.jpg 588w” sizes=”(max-width: 584px) 100vw, 584px” />

Figure 4. Mammal tooth evolution alongside odontocete tooth evolution, reversing the earlier addition of cusps.

On a similar note, basal mammal workers
have put too much reliance on tooth traits. Unfortunately, sometimes that’s all they have. If so, what should they do? They should build a tree topology based on complete or more nearly complete specimens. THEN fit it in those tooth and mandible taxa once the tree topology is established in a broader sense, as in the LRT. Earlier (Fig. 4) you saw how odontocete and archaeocete traits brilliantly document a step-by-step reversal to a simple cone shape, like those of basal pelycosaurs. The addition, subtraction and modification of tooth cusps in mammals occurred much more widely than shown by this one example.


References
Pittman M, O’Connor J, Field DJ, Turner AH, Ma W, Makovicky P and Xu X 2020.
Pennaraptoran Systematics. Chapter 1 from Pittman M and Xu X eds. 2020. Pennaraptoran theropod dinosaurs. Past progress and new Frontiers. Bulletin of the American Museum of Natural History 440; 353pp. 58 figures, 46 tables.

https://pterosaurheresies.wordpress.com/2020/08/23/pennaraptora-avoid-this-junior-synonym/



Source: https://pterosaurheresies.wordpress.com/2020/09/02/pulling-a-larry-martin-with-basal-bird-pectorals-and-hands/


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