Topological Geometrodynamics (TGD) leads to 3 basic realizations of the genetic code. Besides the chemical realization, there is a realization in terms of dark proton sequences (dark nuclei) with 3-proton state representing codon. Ordinary DNA strands would be accompanied by dark magnetic flux tubes carrying the dark proton triplets. Also RNA, amino-acids and tRNA would have dark proton analogs.
The third realization is in terms of dark photon triplets and involves the notion of bio-harmony modelled in terms of icosahedral and tetrahedral geometries with 3-chords of light assigned to the triangular faces of icosahedron and tetrahedron. 12-note scale is realized as a Hamiltonian cycle for icosahedron with the step between nearest neighbor vertices for the cycle realised as a quint scaling of frequency. The 3-chords correspond to the triangular faces of the icosahedron. Also tetrahedral realization of 4-note scale is necessary in order to obtain genetic code. DNA codons correspond to triangular faces and the orbit of a given triangle under the symmetries of the icosahedral harmony correspond to DNA codons coding for the amino acid assigned with the orbit. Vertebrate genetic code emerges as a prediction.
Codon corresponds to 6 bits: this is information in the usual computational sense. Bio-harmony codes for a mood: emotional information related to emotional intelligence. Bio-harmony would be a fundamental representation of emotional information realized already at the molecular level. Dark photon 3-chords and more generally, 3N-chords representing genes, would mediate interaction between various realizations.
Why both icosahedron and tetrahedron? Could this relate to the fact that the tesselations of a hyperbolic space H3 are in fundamental role in quantum TGD. There is one particular tesselation known as tedtrahedral-icosahedral honeycomb. Could the genetic code be realized at the level of fundamental physics as a tedrahedral-icosahedral tesselation of H3 emerging as a cognitive representation for space-time surfaces at the level of M8 and by M8-H duality also in H=M4× CP2. Biological realization could be only one particular realization.
It should be possible to unify all models of the genetic code to single model so that the codon as a dark proton triplet is assigned to a representation as an “active” triangle of icosahedron or tetrahedron containing at it vertices dark protons defining the same codon as the triangle as 3-chord for a given icosahedral harmony. Could these “activated” triangles be assigned with tetrahedral-icosahedral tesselation? Could genes correspond to sequences of these icosahedron-tetrahedron pairs at magnetic flux tubes defined dark generatic code.
See the article Is genetic code part of fundamental physics in TGD framework?.
For a summary of earlier postings see Latest progress in TGD.
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