Gut Bacteria Byproduct Protects Against Salmonella

The researchers determined that propionate doesn’t trigger the immune response to thwart the pathogen. Instead, the molecule prolongs the time it takes the pathogen to start dividing by increasing its internal acidity.

Salmonella infections often cause diarrhea, fever and abdominal cramps. Most people recover within four to seven days. However, the illness may be severe enough to require hospitalization for some patients. Salmonella causes about 1.2 million illnesses, 23,000 hospitalizations and 450 deaths nationwide each year, according to the Centers for Disease Control and Prevention. Most cases are caused by contaminated food.
Different responses to exposure

“Humans differ in their response to exposure to bacterial infections. Some people get infected and some don’t, some get sick and others stay healthy, and some spread the infection while others clear it,” said Denise Monack, PhD, professor of microbiology and immunology and the senior author of the paper. “It has been a real mystery to understand why we see these differences among people. Our finding may shed some light on this phenomenon.”

For years, scientists have been using different strains of mice to determine how various genes might influence susceptibility to infection by intestinal pathogens. But this is the first time that researchers have looked at how the variability of gut bacteria in these mice might contribute to their different responses to pathogens.

“The gut microbiota is an incredibly complex ecosystem. Trillions of bacteria, viruses and fungi form complex interactions with the host and each other in a densely packed, heterogeneous environment,” said Amanda Jacobson, the paper’s lead author and a graduate student in microbiology and immunology. “Because of this, it is very difficult to identify the unique molecules from specific bacteria in the gut that are responsible for specific characteristics like resistance to pathogens.”
From mice to men

The scientists started with an observation that has been recognized in the field for years: Two inbred strains of mice harbor different levels of Salmonella in their guts after being infected with the pathogen. “The biggest challenge was to determine why this was happening,” Jacobson said.

First, they determined that the differences in Salmonella growth could be attributed to the natural composition of bacteria in the intestines of each mouse strain. They did this by performing fecal transplants, which involved giving mice antibiotics to kill off their usual composition of gut bacteria and then replacing the microbial community with the feces of other mice, some of whom were resistant to Salmonella infection. Then, the researchers determined which microbes were responsible for increased resistance to Salmonella infection by using machine-learning tools to identify which groups of bacteria were different between the strains.

They identified a specific group of bacteria, the Bacteroides, which was more abundant in mice transplanted with the microbiota that was protective against Salmonella. Bacteroides produce short-chain fatty acids such as formate, acetate, butyrate and propionate during metabolism, and levels of propionate were threefold higher in mice that were protected against Salmonella growth. Then, the researchers sought to figure out whether propionate protected against Salmonella by boosting the immune system like other short-chain fatty acids do.

The scientists examined their Salmonella model for the potential impact of propionate on the immune system but found that the molecule had a more direct effect on the growth of Salmonella. Propionate acts on Salmonella by dramatically decreasing its intracellular pH and thus increasing the time it takes for the bacterium to start dividing and growing, the study found.

“Collectively, our results show that when concentrations of propionate, which is produced by Bacteroides, in the gut are high, Salmonella are unable to raise their internal pH to facilitate cellular functions required for growth,” Jacobson said. “Of course, we would want to know how translatable this is to humans.”
Reducing the impact of salmonella

“The next steps will include determining the basic biology of the small molecule propionate and how it works on a molecular level,” Jacobson said. In addition, the researchers will work to identify additional molecules made by intestinal microbes that affect the ability of bacterial pathogens like Salmonella to infect and “bloom” in the gut. They are also trying to determine how various diets affect the ability of these bacterial pathogens to infect and grow in the gut and then shed into the environment. “These findings will have a big impact on controlling disease transmission,” Monack said.

The findings could also influence treatment strategies. Treating Salmonella infections sometimes require the use of antibiotics, which may make Salmonella-induced illness or food poisoning worse since they also kill off the “good” bacteria that keep the intestine healthy, according to Monack. Using propionate to treat these infections could overcome this limitation. “Reducing the use of antibiotics is an added benefit because overuse of antibiotics leads to increased incidence of antibiotic-resistant microbes,” Monack said.

Other Stanford co-authors of the paper are postdoctoral scholar Manohary Rajendram, PhD; graduate students Lilian Lam, Fiona Tamburini, Will Van Treuren, Kali Pruss, Jared Honeycutt and Kyler Lugo; Trung Pham, MD, instructor of pediatrics and infectious diseases; life science researcher Russel Stabler; Donna Bouley, DVM, PhD, professor emeritus of comparative medicine; José Vilches-Moure, PhD, assistant professor of comparative medicine; senior research scientist Mark Smith, PhD; Justin Sonnenburg, PhD, associate professor of microbiology and immunology; Ami Bhatt, MD, PhD, assistant professor of medicine and of genetics; and KC Huang, PhD, associate professor of bioengineering and of microbiology and immunology.

Bhatt, Huang, Monack, Sonnenburg and Vilches-Moure are members of Stanford Bio-X. Bhatt, Huang, Monack and Sonnenburg are faculty fellows at Stanford ChEM-H. Bhatt, Bouley and Vilches-Moure are members of the Stanford Cancer Institute. Bhatt and Monack are members of the Stanford Child Health Research Institute. Vilches-Moure is a member of the Stanford Cardiovascular Institute. Bouley is an affiliate of the Stanford Woods Institute for the Environment. Sonnenburg and Huang are Chan Zuckerberg Biohub Investigators.

The study was funded by the National Institutes of Health (grants R01DK085025, T32GM007276, R01AI116059 and F32AI133917), the Paul Allen Stanford Discovery Center on Systems Modeling of Infection and the National Science Foundation.

Stanford’s Department of Microbiology and Immunology also supported the work.
Contacts and sources:
Kimber Price
Stanford Medicine

Citation: A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.
Amanda Jacobson, Lilian Lam, Manohary Rajendram, Fiona Tamburini, Jared Honeycutt, Trung Pham, Will Van Treuren, Kali Pruss, Stephen Russell Stabler, Kyler Lugo, Donna M. Bouley, Jose G. Vilches-Moure, Mark Smith, Justin L. Sonnenburg, Ami S. Bhatt, Kerwyn Casey Huang, Denise Monack. Cell Host & Microbe, 2018; DOI: 10.1016/j.chom.2018.07.002